Archive for May, 2009

Volcanos, glaciers, and beaches

May 25, 2009

Yesterday we enjoyed a long tour around Oregon and Washington; we hiked to Spirit Lake beneath Mount Saint Helens, and then drove to Cannon Beach to watch sunset.

You can check-out my Flickr set here.

lost in translation

May 19, 2009

Sometimes Google Translate produces less-than-optimal results.  Here is how “Everything that Rises must Converge” (the title of a book by Flannery O’Connor) becomes “You grow all the convergence criteria.”

original English title: Everything that Rises must Converge

English to Russian: Все, что рост должен сходиться (all that growth should converge)

Russian to Hebrew: הכל חייב להפגש הצומחת

Hebrew to Japanese: すべてが収束する必要があります育つ (I think: you need to grow up all the convergence?)

Japanese to German: Sie müssen erwachsen werden alle Konvergenzkriterien (you need to grow up all the convergence criteria)

German to Arabic: عليك يكبر جميع معايير التقارب

Arabic to French: Vous grandir tous les critères de convergence

French to English: You grow all the convergence criteria

Sean Carroll, EvoDevo @ U.O.

May 5, 2009

Sean Carroll visited the University of Oregon over the past couple days.  He’s authored hundreds of research papers and several books on the subject of evolutionary biology.  Here is a brief summary of Sean’s visit. . .

Last night, Sean gave the fifth lecture in our Darwin series.  This was a public talk (for scientists and non-scientists alike) and Sean presented material from his latest book “Remarkable Creatures.” Specifically, he focused on the harrowing stories of Wallace, Darwin, and Bates sailing around South America and the Galapagos islands.  The greatest insight from this lecture was that Wallace and Darwin independently converged on the theory of natural selection.  I think their convergence testifies to the strength of the theory.

Today, Sean gave a technical talk (for the EvoDevo crowd) titled “Endless Flies Most Beautiful: Cis-Regulatory Sequences and the Evolution of Animal Form.”  Sean focused on the central EvoDevo question: How do forms (i.e. morphologies) evolve? He thinks an examination of mosaic pleiotropy is the key to answering this question.   Historically, gene duplication was thought to be the primary mechanism by which new forms evolved.  Sean cites Susumu Ohno’s classic book “Evolution by Gene Development.” However, Sean countered Ohno’s thesis by showing evidence that evolution might actually select against gene duplication.  As an example, the evolutionary history of anthropod and tetrapod Hox genes — a gene that is known to drive some morphologies –  is a story of gene loss, not gene duplication.

Later approaches to the EvoDevo question examined the role of protein sequence evolution, and then eventually King and Wilson examined the role of protein sequence expression.  Essentially, King and Wilson reduced the question “how do forms evolve?” to the micro-question of “how do cis-regulatory elements evolve?”  For the remainder of Sean’s talk, he focused on “cis-regulatory elements as the units of evolution.”

Before the EvoDevo community was examining regulatory elements, inter-species genetic analysis was typically occuring over large taxonomic distances.  This approach proved problematic because transcription factor binding sites are rarely conserved over large phylogenetic distances.  Consequently, the EvoDevo community was forced to find new systems for study.  Sean Carroll’s lab — for example — shifted focus away from studying butterflies and began investigating pigmentation diversity in Drosophila (see Nature, Trends in Genetics, and PNAS).  Unlike butterflies, Drosophila studies offered the ability to explore evolutionary mechanisms at a deeper mechanistic/genetic level.  Among many subsequent results, Sean’s lab discovered the Tan gene locus is responsible for  mosaic pleiotropy in Drosophila Santomea’s wing pigmentation.

Based on results from the Tan gene — and several other studies — Sean concluded that regulatory sequence evolution is the more likely mechanism of morphological change than the coding sequence itself (see PLoS Biology 2005).  Sean gave several examples to support this theory, including a story about the Engrailed gene: an ancient regulatory protein that was recently co-opted to control development of Drosophila wing spots.

Overall, this was an enlightening visit and I feel fortunate to be studying at a university that can engage this caliber science.  For more information, check-out The Carroll Lab.


May 4, 2009


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